JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA3_chr18_23684453_23960066	0/0	c0013	10002	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0014	10002	2	0	2	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0015	10002	2	0	2	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0016	10002	2	0	1	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0017	10002	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/1	c0018	10002	2	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	1/0	c0019	10002	2	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0020	10002	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0021	10002	2	0	1	0	1	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0022	10002	2	0	0	0	0	2	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0023	10002	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0024	10002	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0025	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0026	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0027	10002	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0028	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0029	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0030	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0031	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0032	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0033	10002	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0034	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0035	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0036	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0037	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0038	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0039	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0040	10002	1	0	0	0	1	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0041	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0042	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0043	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0044	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0045	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0046	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0047	10002	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0048	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0049	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0050	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0051	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0052	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0053	10002	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0054	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0055	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0056	10002	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0057	10002	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0058	10002	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23868020_23960066	1/0	c0001	5175	165	41	19	69	8	27	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/1	c0002	5175	57	3	9	37	1	6	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0003	5175	41	12	13	12	1	3	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0004	5175	8	0	3	5	0	0	copy fasta	LAMA3	chr18	23868020	23960066