Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCB11_chr2_168915781_169036324	0/0	c0045	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0046	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0047	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0048	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0049	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0050	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0051	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0052	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0053	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0054	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0055	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0056	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0057	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0058	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0059	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0060	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0061	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0062	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0063	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0064	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0065	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0066	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0067	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0068	3966	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0069	3966	1	0	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB1_chr7_87498017_87605884	0/0	c0001	3843	144	66	27	31	9	11	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	1/0	c0002	3843	66	3	10	37	4	11	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0003	3843	35	3	4	27	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0004	3843	34	0	6	26	0	2	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0005	3843	23	1	9	10	1	2	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0006	3843	7	6	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0007	3843	5	4	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0008	3843	4	0	2	2	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0009	3843	4	0	1	1	0	2	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0010	3843	3	0	1	0	0	2	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0011	3843	3	3	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0012	3843	2	0	2	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0013	3843	2	2	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0014	3843	2	0	1	0	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0015	3843	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0016	3843	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0017	3843	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0018	3843	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0019	3843	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0020	3843	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0021	3843	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0022	3843	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/1	c0023	3843	1	0	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0024	3843	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0025	3843	1	0	0	0	0	1	copy fasta	ABCB1	chr7	87498017	87605884