JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANGPT4_chr20_864900_921334	0/0	c0016	1512	1	0	1	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0017	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0018	1512	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0019	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0020	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0021	1512	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0022	1512	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0023	1512	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0024	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0025	1512	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0026	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0027	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0028	1512	1	0	0	0	0	1	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0029	1512	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0030	1512	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPTL1_chr1_178844535_178876077	1/1	c0001	1476	340	61	76	150	11	40	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0002	1476	43	0	0	42	1	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0003	1476	22	22	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0004	1476	10	9	1	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0005	1476	3	2	1	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0006	1476	2	0	0	2	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0007	1476	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0008	1476	1	1	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0009	1476	1	1	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	c0010	1476	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL2_chr9_127082348_127127635	1/0	c0001	1482	273	79	47	108	13	25	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/1	c0002	1482	85	5	21	45	5	8	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0003	1482	5	5	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0004	1482	2	2	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0005	1482	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0006	1482	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0007	1482	1	0	0	0	0	1	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0008	1482	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0009	1482	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0010	1482	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	c0011	1482	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL3_chr1_62592520_62611313	1/1	c0001	1383	327	63	66	142	15	39	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0002	1383	21	7	4	10	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0003	1383	12	11	1	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0004	1383	2	0	0	2	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0005	1383	1	1	0	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0006	1383	1	0	1	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0007	1383	1	0	0	0	0	1	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	c0008	1383	1	0	0	0	1	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL4_chr19_8359155_8379370	1/1	c0001	1221	276	44	53	135	11	31	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0002	1221	70	23	11	21	4	11	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0003	1221	12	9	1	1	0	1	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0004	1221	11	11	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0005	1221	9	0	5	0	1	3	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0006	1221	6	0	0	6	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370