JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA3_chr18_23868020_23960066	0/0	c0005	5175	7	7	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0006	5175	7	7	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0007	5175	4	0	1	2	1	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0008	5175	4	0	2	0	2	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0009	5175	3	0	3	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0010	5175	3	3	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0011	5175	3	1	1	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0012	5175	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0013	5175	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0014	5175	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0015	5175	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0016	5175	2	0	0	0	0	2	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0017	5175	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0018	5175	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0019	5175	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0020	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0021	5175	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0022	5175	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0023	5175	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0024	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0025	5175	1	0	0	0	1	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0026	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0027	5175	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0028	5175	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0029	5175	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0030	5175	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0031	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0032	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0033	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0034	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0035	5175	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0036	5175	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	c0037	5175	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA4_chr6_112102931_112259567	0/0	c0001	5472	46	1	14	24	2	5	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/1	c0002	5472	32	8	7	10	0	6	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0003	5472	23	4	5	6	2	6	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0004	5472	23	5	2	12	1	3	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0005	5472	19	0	2	14	0	3	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0006	5472	19	6	3	10	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0007	5472	14	6	0	7	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	1/0	c0008	5472	13	3	4	3	1	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0009	5472	11	0	1	8	1	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0010	5472	10	1	3	5	1	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0011	5472	10	10	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0012	5472	9	0	0	8	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0013	5472	8	0	2	5	1	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0014	5472	6	2	2	2	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0015	5472	5	4	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0016	5472	4	1	0	3	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0017	5472	3	3	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567