JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA4_chr6_112102931_112259567	0/0	c0018	5472	3	1	0	2	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0019	5472	3	0	0	3	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0020	5472	3	3	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0021	5472	2	0	0	2	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0022	5472	2	0	0	1	1	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0023	5472	2	2	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0024	5472	2	0	1	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0025	5472	2	2	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0026	5472	2	0	2	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0027	5472	2	0	0	2	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0028	5472	2	1	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0029	5472	2	0	1	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0030	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0031	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0032	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0033	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0034	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0035	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0036	5472	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0037	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0038	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0039	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0040	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0041	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0042	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0043	5472	1	0	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0044	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0045	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0046	5472	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0047	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0048	5472	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0049	5472	1	0	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0050	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0051	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0052	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0053	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0054	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0055	5472	1	0	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0056	5472	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0057	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0058	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0059	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0060	5472	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	c0061	5472	1	0	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA5_chr20_62304065_62372312	0/0	c0001	11088	10	0	1	5	2	2	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0002	11088	6	4	2	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0003	11088	6	0	3	3	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0004	11088	5	0	0	4	1	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0005	11088	4	0	1	2	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0006	11088	3	0	3	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312