JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA5_chr20_62304065_62372312	0/0	c0057	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0058	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0059	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0060	11089	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0061	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0062	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0063	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0064	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0065	11089	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0066	11072	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0067	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0068	11089	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0069	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0070	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0071	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0072	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0073	10984	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0074	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0075	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0076	11103	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0077	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0078	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0079	11089	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0080	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0081	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/1	c0082	11088	1	0	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0083	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0084	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0085	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0086	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0087	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0088	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0089	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0090	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0091	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0092	11088	1	0	0	0	1	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0093	11089	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0094	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0095	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0096	11089	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0097	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0098	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0099	11089	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0100	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0101	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0102	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0103	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0104	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0105	11088	1	0	0	0	1	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0106	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312