JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA5_chr20_62304065_62372312	0/0	c0107	11098	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0108	11088	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0109	11089	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0110	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0111	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0112	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0113	11089	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0114	11088	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0115	11089	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0116	11089	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0117	11065	1	0	0	0	1	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0118	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0119	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0120	11089	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0121	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0122	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0123	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0124	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0125	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0126	11089	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0127	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0128	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0129	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0130	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	1/0	c0131	11088	1	0	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0132	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0133	11110	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0134	11088	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0135	11089	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	c0136	11088	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMB1_chr7_107918799_108008161	0/0	c0001	5361	83	7	18	45	4	9	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/1	c0002	5361	50	3	12	30	1	3	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	1/0	c0003	5361	44	7	7	18	5	6	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0004	5361	24	1	4	19	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0005	5361	17	6	1	9	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0006	5361	14	6	1	2	0	5	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0007	5361	11	11	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0008	5361	9	1	3	2	1	2	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0009	5361	8	1	3	4	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0010	5361	6	3	2	0	1	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0011	5361	4	1	1	0	0	2	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0012	5361	4	2	1	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0013	5361	3	3	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0014	5361	3	3	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0015	5361	3	3	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0016	5361	3	3	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0017	5361	3	0	0	3	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0018	5361	3	0	0	2	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0019	5361	2	2	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0020	5361	2	0	0	2	0	0	copy fasta	LAMB1	chr7	107918799	108008161