JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMB1_chr7_107918799_108008161	0/0	c0071	5361	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0072	5361	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0073	5361	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0074	5361	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0075	5361	1	0	1	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0076	5361	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0077	5361	1	0	0	0	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0078	5361	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0079	5361	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0080	5361	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0081	5361	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0082	5361	1	0	0	0	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	c0083	5361	1	0	1	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB2_chr3_49116114_49138050	1/0	c0001	5397	237	69	47	80	9	31	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0002	5397	12	2	1	0	4	5	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0003	5397	6	5	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/1	c0004	5397	5	1	2	1	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0005	5397	5	0	5	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0006	5397	4	0	0	4	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0007	5397	4	0	1	0	3	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0008	5397	3	0	0	3	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0009	5397	3	3	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0010	5397	2	0	0	2	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0011	5397	1	0	0	1	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0012	5397	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0013	5397	1	0	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0014	5397	1	0	0	0	0	1	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0015	5397	1	0	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0016	5397	1	0	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0017	5397	1	0	0	1	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0018	5397	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0019	5397	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0020	5397	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0021	5397	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0022	5397	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	c0023	5397	1	0	0	0	0	1	copy fasta	LAMB2	chr3	49116114	49138050
LAMB3_chr1_209609870_209657425	0/0	c0001	3519	52	0	6	40	0	6	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/1	c0002	3519	42	0	11	25	0	5	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0003	3519	39	10	10	11	2	6	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0004	3519	36	1	5	30	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0005	3519	24	2	12	7	2	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0006	3519	18	17	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0007	3519	13	2	5	1	1	4	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0008	3519	12	0	0	12	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0009	3519	12	0	5	1	2	4	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0010	3519	12	1	4	0	0	7	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	1/0	c0011	3519	11	1	4	0	2	3	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0012	3519	9	0	0	9	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0013	3519	9	9	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0014	3519	8	0	0	5	0	3	copy fasta	LAMB3	chr1	209609870	209657425