JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMB3_chr1_209609870_209657425	0/0	c0065	3519	1	0	1	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0066	3519	1	0	1	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0067	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0068	3519	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0069	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0070	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0071	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0072	3519	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0073	3519	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0074	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0075	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0076	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0077	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0078	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0079	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0080	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0081	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0082	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0083	3519	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0084	3519	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0085	3519	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	c0086	3519	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB4_chr7_108018553_108135361	1/0	c0001	5286	76	10	17	39	5	4	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/1	c0002	5286	61	5	14	28	3	10	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0003	5286	19	0	2	14	0	3	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0004	5286	12	10	2	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0005	5286	7	1	0	6	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0006	5286	6	0	0	5	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0007	5286	6	0	0	6	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0008	5286	6	2	1	3	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0009	5286	5	2	1	2	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0010	5286	4	4	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0011	5286	4	4	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0012	5286	4	0	0	1	1	2	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0013	5286	4	4	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0014	5286	4	1	1	0	0	2	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0015	5286	3	3	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0016	5286	3	3	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0017	5286	3	0	3	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0018	5286	2	1	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0019	5286	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0020	5286	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0021	5286	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0022	5286	2	1	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0023	5286	2	1	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0024	5286	2	1	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0025	5286	2	0	1	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0026	5286	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0027	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0028	5286	1	0	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361