JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMB4_chr7_108018553_108135361	0/0	c0029	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0030	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0031	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0032	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0033	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0034	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0035	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0036	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0037	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0038	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0039	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0040	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0041	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0042	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0043	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0044	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0045	5286	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0046	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0047	5286	1	0	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0048	5286	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0049	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0050	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0051	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0052	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0053	5286	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0054	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0055	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0056	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0057	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0058	5286	1	0	0	0	1	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0059	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0060	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0061	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0062	5286	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0063	5286	1	0	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0064	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0065	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0066	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0067	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0068	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0069	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0070	5286	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0071	5286	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0072	5286	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	c0073	5286	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMC1_chr1_183018420_183150592	1/0	c0001	4830	94	20	13	42	6	12	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0002	4830	78	4	16	48	2	8	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0003	4830	54	3	15	29	2	5	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/1	c0004	4830	11	7	1	0	0	2	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0005	4830	9	8	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592