JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANGPTL4_chr19_8359155_8379370	0/0	c0007	1221	5	4	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0008	1221	4	1	3	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0009	1221	3	0	3	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0010	1221	2	2	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0011	1221	2	2	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0012	1221	2	0	0	2	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0013	1221	1	0	0	0	0	1	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0014	1221	1	0	0	0	0	1	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0015	1221	1	0	0	1	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0016	1221	1	0	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0017	1221	1	0	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	c0018	1221	1	0	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL5_chr11_101885674_101921522	0/1	c0001	1167	396	84	70	184	18	39	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0002	1167	10	6	1	0	0	3	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0003	1167	3	3	0	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	1/0	c0004	1167	2	0	0	0	0	1	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0005	1167	2	0	0	2	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0006	1167	2	0	0	2	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0008	1167	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0009	1167	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0010	1167	1	0	1	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0011	1167	1	1	0	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0012	1167	1	0	0	0	0	1	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	c0013	1167	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL6_chr19_10087338_10107678	1/1	c0001	1413	433	97	81	199	13	41	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0002	1413	8	0	0	8	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0003	1413	7	0	2	1	0	4	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0004	1413	4	0	0	4	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0005	1413	2	0	1	0	0	1	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0006	1413	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0007	1413	1	1	0	0	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0008	1413	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0009	1413	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0010	1413	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0011	1413	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0012	1413	1	0	0	0	1	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	c0013	1413	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL7_chr1_11184355_11200981	1/1	c0001	1041	282	74	48	119	10	29	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0002	1041	38	4	10	13	2	9	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0003	1041	35	14	6	10	0	5	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0004	1041	4	4	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0005	1041	1	0	0	1	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0008	1041	1	0	0	0	0	1	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL8_chr19_11234619_11246943	1/1	c0001	597	250	23	51	128	12	34	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0002	597	91	16	12	55	2	6	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0003	597	68	44	11	8	2	3	copy fasta	ANGPTL8	chr19	11234619	11246943