JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMC1_chr1_183018420_183150592	0/0	c0006	4830	7	6	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0007	4830	5	5	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0008	4830	5	5	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0009	4830	3	0	0	3	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0010	4830	3	0	1	0	2	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0011	4830	2	1	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0012	4830	2	0	0	2	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0013	4830	2	2	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0014	4830	2	0	0	2	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0015	4830	2	0	0	2	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0016	4830	2	2	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0017	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0018	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0019	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0020	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0021	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0022	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0023	4830	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0024	4830	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0025	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0026	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0027	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0028	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0029	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0030	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0031	4830	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0032	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0033	4830	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0034	4830	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0035	4830	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0036	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0037	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0038	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0039	4830	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0040	4830	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0041	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0042	4830	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	c0043	4830	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC2_chr1_183181264_183250127	1/1	c0001	3582	139	26	26	62	7	16	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0002	3582	60	4	13	36	5	2	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0003	3582	32	6	4	19	0	3	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0004	3582	31	14	6	4	0	7	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0005	3582	15	14	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0006	3582	13	0	0	13	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0007	3582	7	4	3	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0008	3582	6	6	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0009	3582	4	4	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0010	3582	3	3	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0011	3582	2	2	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0012	3582	2	1	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127