JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMC2_chr1_183181264_183250127	0/0	c0013	3582	2	1	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0014	3582	1	0	0	0	1	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0015	3582	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0016	3582	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0017	3582	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0018	3582	1	0	0	0	0	1	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0019	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0020	3582	1	0	0	0	0	1	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0021	3582	1	0	0	0	1	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0022	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0023	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0024	3582	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0025	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0026	3582	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0027	3582	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0028	3582	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0029	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0030	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0031	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0032	3582	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	c0033	3582	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC3_chr9_131004174_131099473	0/0	c0001	4728	12	0	9	3	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0002	4728	12	0	0	11	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0003	4728	10	0	0	10	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0004	4728	6	0	1	3	2	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0005	4728	5	0	1	3	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0006	4728	5	0	3	1	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0007	4728	5	0	2	2	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0008	4728	5	0	0	5	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0009	4728	4	0	0	4	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0010	4728	4	2	0	2	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0011	4728	4	0	0	1	3	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0012	4728	4	0	0	4	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0013	4728	4	1	2	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0014	4728	4	0	0	4	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0015	4728	4	0	0	3	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0016	4728	4	1	2	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0017	4728	4	0	1	3	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/1	c0018	4728	4	0	2	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0019	4728	3	2	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0020	4728	3	0	0	1	0	2	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0021	4728	3	1	0	1	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0022	4728	3	3	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0023	4728	3	0	0	3	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0024	4728	3	0	1	0	0	2	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0025	4728	3	2	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	1/0	c0026	4728	3	0	0	0	0	2	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0027	4728	3	0	3	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0028	4728	3	0	3	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0029	4728	3	0	1	0	2	0	copy fasta	LAMC3	chr9	131004174	131099473