JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMC3_chr9_131004174_131099473	0/0	c0080	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0081	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0082	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0083	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0084	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0085	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0086	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0087	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0088	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0089	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0090	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0091	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0092	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0093	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0094	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0095	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0096	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0097	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0098	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0099	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0100	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0101	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0102	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0103	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0104	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0105	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0106	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0107	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0108	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0109	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0110	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0111	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0112	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0113	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0114	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0115	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0116	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0117	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0118	4728	1	0	0	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0119	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0120	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0121	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0122	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0123	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0124	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0125	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0126	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0127	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0128	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0129	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473