JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMC3_chr9_131004174_131099473	0/0	c0130	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0131	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0132	4728	1	0	0	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0133	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0134	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0135	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0136	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0137	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0138	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0139	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0140	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0141	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0142	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0143	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0144	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0145	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0146	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0147	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0148	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0149	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0150	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0151	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0152	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0153	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0154	4728	1	0	0	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0155	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0156	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0157	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0158	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0159	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0160	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0161	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0162	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0163	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0164	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0165	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0166	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0167	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0168	4728	1	0	0	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0169	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0170	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0171	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0172	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0173	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0174	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0175	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0176	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0177	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0178	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0179	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473