JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMC3_chr9_131004174_131099473	0/0	c0180	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0181	4728	1	0	0	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0182	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0183	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0184	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0185	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0186	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0187	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0188	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0189	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0190	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0191	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0192	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0193	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0194	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0195	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0196	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0197	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0198	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0199	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0200	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0201	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0202	4728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0203	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0204	4728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0205	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0206	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0207	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0208	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0209	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0210	4728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0211	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0212	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0213	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0214	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0215	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0216	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0217	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0218	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0219	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0220	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0221	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0222	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	c0223	4728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMP1_chr13_113292239_113328672	0/0	c0001	1254	282	59	65	112	14	32	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0002	1254	20	0	2	18	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0003	1254	17	15	2	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0004	1254	10	8	2	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0005	1254	9	8	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0006	1254	5	0	5	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672