JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMP1_chr13_113292239_113328672	0/0	c0007	1254	3	0	0	3	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0008	1250	2	0	0	0	0	2	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0009	1254	2	1	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0010	1254	1	0	0	0	0	1	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0011	1254	1	0	0	0	0	1	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0012	1254	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	c0013	1254	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP2_chrX_120421148_120474296	1/1	c0001	1233	199	50	31	85	8	23	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	c0002	1233	95	18	19	46	3	9	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	c0003	1234	1	0	0	1	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	c0004	1233	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	c0005	1233	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP3_chr3_183117215_183167734	0/0	c0001	1251	118	43	16	50	1	8	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/1	c0002	1251	118	16	25	52	6	18	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	1/0	c0003	1251	99	23	12	53	0	10	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0004	1251	17	1	0	11	2	3	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0005	1251	4	3	1	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0006	1251	3	0	2	0	1	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0007	1251	3	0	0	3	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0008	1251	2	2	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0009	1251	2	1	1	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0010	1251	2	0	0	2	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0011	1251	1	1	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0012	1251	1	0	0	0	0	1	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0013	1251	1	0	1	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	c0014	1251	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP5_chr20_9509590_9535524	1/1	c0001	843	347	48	62	180	16	39	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	c0002	843	92	45	15	29	2	1	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	c0003	843	7	6	1	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	c0004	843	1	1	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	c0005	843	1	0	0	1	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMTOR1_chr11_72092292_72108297	1/1	c0001	486	423	92	76	207	8	38	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	c0002	486	1	0	0	1	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR2_chr1_156049782_156063506	1/0	c0001	378	312	76	54	125	11	45	copy fasta	LAMTOR2	chr1	156049782	156063506
LAMTOR2_chr1_156049782_156063506	0/1	c0002	378	23	8	12	0	1	1	copy fasta	LAMTOR2	chr1	156049782	156063506
LAMTOR2_chr1_156049782_156063506	0/0	c0003	378	1	0	0	1	0	0	copy fasta	LAMTOR2	chr1	156049782	156063506
LAMTOR3_chr4_99873336_99899427	1/1	c0001	375	384	92	70	174	12	34	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR4_chr7_100143918_100159203	0/0	c0001	300	234	41	38	120	9	26	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	1/1	c0002	300	165	44	26	68	7	18	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	0/0	c0003	300	3	3	0	0	0	0	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	0/0	c0004	300	2	0	2	0	0	0	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR5_chr1_110396253_110412694	1/1	c0001	276	444	90	76	214	12	50	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	c0002	276	1	1	0	0	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	c0003	276	1	1	0	0	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LANCL1_chr2_210426251_210481759	1/1	c0001	1200	346	88	62	155	12	27	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	c0002	1200	4	4	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	c0003	1200	2	2	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	c0004	1200	2	0	0	2	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	c0005	1200	1	0	0	1	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	c0006	1200	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759