JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LANCL1_chr2_210426251_210481759	0/0	c0007	1200	1	0	0	0	0	1	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	c0008	1200	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL2_chr7_55360337_55438737	0/0	c0001	1353	118	12	26	66	2	12	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	1/1	c0002	1353	113	26	13	47	8	17	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0003	1353	71	16	14	28	6	7	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0004	1353	21	19	1	0	0	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0005	1353	19	18	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0006	1353	2	2	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0007	1353	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0009	1353	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0010	1353	1	0	0	0	0	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0011	1353	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0012	1353	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0013	1353	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	c0014	1353	1	0	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL3_chrX_37566661_37689463	1/1	c0001	1263	126	17	22	64	5	16	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0002	1263	42	24	11	4	0	3	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0003	1263	20	20	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0004	1263	5	5	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0005	1263	2	0	0	2	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0006	1263	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0008	1264	1	0	0	1	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0009	1263	1	0	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0010	1263	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	c0011	1263	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LAP3_chr4_17572198_17612970	0/1	c0001	1560	187	37	39	78	8	24	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	1/0	c0002	1560	59	17	11	13	6	11	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	c0003	1560	18	18	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	c0004	1560	15	13	1	0	0	1	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	c0005	1560	15	14	1	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	c0006	1560	4	0	4	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	c0007	1560	1	0	0	1	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	c0008	1560	1	1	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAPTM4A_chr2_20027650_20056628	1/1	c0001	702	343	96	57	153	12	23	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	c0002	702	71	2	10	47	4	8	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	c0003	702	6	0	5	1	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	c0004	702	3	0	0	3	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	c0005	702	1	0	0	0	0	1	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4B_chr8_97770788_97858013	1/1	c0001	681	343	87	54	154	14	32	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	c0002	681	25	7	12	0	0	6	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	c0003	681	6	3	1	0	2	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	c0004	681	3	0	3	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	c0005	681	2	0	0	2	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	c0006	681	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM5_chr1_30727469_30762774	0/0	c0001	789	215	56	36	108	3	12	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	1/0	c0002	789	142	37	27	44	5	28	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	c0003	789	35	4	8	13	5	5	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	c0004	789	14	0	4	10	0	0	copy fasta	LAPTM5	chr1	30727469	30762774