JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAPTM5_chr1_30727469_30762774	0/0	c0005	789	6	0	1	3	0	2	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	c0006	789	5	0	1	2	1	1	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	c0007	789	2	2	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	c0008	789	1	0	1	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	c0009	789	1	1	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LARGE1_chr22_33267509_33925476	1/1	c0001	2271	58	37	10	3	1	5	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0002	2271	19	6	6	3	3	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0003	2271	7	6	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0004	2271	4	3	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0005	2271	3	3	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0006	2271	2	0	2	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0007	2271	2	2	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0008	2271	2	0	1	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0009	2271	2	1	0	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0010	2271	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0011	2271	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0012	2271	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0013	2271	1	0	0	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0014	2271	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0015	2271	1	0	0	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0016	2271	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0017	2271	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0018	2271	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0019	2271	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	c0020	2271	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE2_chr11_45917656_45934096	1/0	c0001	2166	204	58	24	109	1	11	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/1	c0002	2166	174	24	43	62	14	30	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0003	2166	11	0	5	0	3	3	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0004	2166	5	5	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0005	2166	3	0	0	3	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0006	2166	3	1	2	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0007	2166	3	0	0	0	0	3	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0008	2166	2	0	0	2	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0009	2166	2	2	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0010	2166	2	0	0	2	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0011	2166	1	0	1	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0012	2166	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0013	2166	1	0	0	0	0	1	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0014	2166	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0015	2166	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0016	2166	1	1	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0017	2166	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0018	2166	1	1	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	c0019	2166	1	0	1	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARP1B_chr4_128056312_128216988	0/0	c0001	2745	173	25	40	77	8	23	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	1/1	c0002	2745	122	29	20	59	5	7	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0003	2745	12	12	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0004	2745	5	0	3	0	0	2	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0005	2745	3	3	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0006	2745	3	2	1	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988