JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LARP1B_chr4_128056312_128216988	0/0	c0007	2745	3	2	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0008	2745	3	3	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0009	2745	2	2	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0010	2745	1	0	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0011	2745	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0012	2745	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0013	2745	1	0	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0014	2745	1	0	0	0	0	1	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0015	2745	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0016	2745	1	0	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0017	2745	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0018	2745	1	0	0	0	1	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	c0019	2745	1	0	0	0	0	1	copy fasta	LARP1B	chr4	128056312	128216988
LARP1_chr5_154750377_154822605	1/1	c0001	3291	266	79	52	82	14	37	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0002	3291	14	4	3	1	2	4	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0003	3291	11	0	0	11	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0004	3291	5	5	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0005	3291	2	0	1	0	0	1	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0006	3291	2	2	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0007	3291	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0008	3291	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0009	3291	1	0	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	c0010	3291	1	0	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP4B_chr10_804497_936705	1/0	c0001	2217	278	81	61	90	18	27	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	c0002	2217	4	0	2	0	0	2	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	c0003	2217	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	c0004	2217	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	c0005	2217	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/1	c0006	2217	1	0	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	c0007	2217	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	c0008	2217	1	0	0	0	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4_chr12_50395885_50485004	1/1	c0001	2175	269	78	42	114	9	24	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0002	2175	14	0	0	13	0	1	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0003	2175	11	0	2	4	1	4	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0004	2175	8	0	0	8	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0005	2175	3	0	0	3	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0006	2175	3	2	1	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0007	2175	3	0	3	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0008	2175	2	2	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0009	2175	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0010	2175	1	1	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0011	2175	1	0	0	0	0	1	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0012	2175	1	1	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	c0013	2175	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP6_chr15_70824130_70859157	1/0	c0001	1476	186	52	19	86	6	22	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/1	c0002	1476	171	22	45	82	3	18	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	c0003	1476	17	10	2	0	3	2	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	c0004	1476	9	8	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	c0005	1476	5	4	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	c0006	1476	2	0	0	0	1	1	copy fasta	LARP6	chr15	70824130	70859157