JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANGPTL8_chr19_11234619_11246943	0/0	c0004	597	8	8	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0005	597	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0006	597	1	0	0	1	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0007	597	1	0	0	0	0	1	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0008	597	1	0	0	1	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0009	597	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0010	597	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0011	597	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0012	597	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	c0013	597	1	0	0	1	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANG_chr14_20683764_20699183	1/1	c0001	444	420	88	62	222	10	36	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	c0002	444	41	5	20	4	6	6	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	c0003	444	6	4	2	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	c0004	444	2	0	0	0	0	2	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	c0005	444	1	0	1	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	c0006	444	1	1	0	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	c0007	444	1	0	1	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANHX_chr12_133213312_133240877	0/1	c0001	1452	241	28	42	138	8	24	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	1/0	c0002	1452	129	58	29	23	4	14	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0003	1452	41	1	8	16	5	11	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0004	1452	8	7	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0005	1452	4	2	2	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0006	1452	4	0	0	4	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0007	1452	4	0	0	4	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0008	1452	2	2	0	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0009	1452	2	2	0	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0010	1452	1	0	0	0	1	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0011	1452	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0012	1452	1	0	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0013	1452	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0014	1452	1	0	0	0	0	1	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0015	1452	1	0	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	c0016	1452	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANK1_chr8_41648225_41802622	0/0	c0001	5643	45	7	6	26	2	4	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0002	5643	38	4	11	12	4	7	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/1	c0003	5643	27	1	8	7	2	8	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0004	5643	24	1	3	13	0	7	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	1/0	c0005	5643	24	12	5	6	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0006	5643	12	12	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0007	5643	8	7	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0008	5643	7	0	0	5	2	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0009	5643	7	0	5	0	1	1	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0010	5643	6	0	0	6	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0011	5643	5	5	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0012	5643	5	3	1	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0013	5643	4	4	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0014	5643	4	0	1	0	0	3	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0015	5643	3	0	0	3	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0016	5643	3	2	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0017	5643	3	3	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622