JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LARP6_chr15_70824130_70859157	0/0	c0007	1476	1	0	0	0	1	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	c0008	1476	1	0	0	0	0	1	copy fasta	LARP6	chr15	70824130	70859157
LARP7_chr4_112632143_112662586	1/1	c0001	1749	368	93	64	161	16	32	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0002	1749	39	0	0	34	0	5	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0003	1749	2	0	0	0	0	2	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0004	1749	2	2	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0005	1749	2	0	2	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0006	1749	2	2	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0007	1749	1	1	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0008	1749	1	1	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0009	1749	1	1	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0010	1749	1	0	0	1	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	c0011	1749	1	0	0	0	0	1	copy fasta	LARP7	chr4	112632143	112662586
LARS1_chr5_146108034_146187650	1/0	c0001	3531	163	60	25	54	4	19	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/1	c0002	3531	77	0	15	45	3	13	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0003	3531	16	14	2	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0004	3531	13	3	3	0	2	5	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0005	3531	6	0	4	0	2	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0006	3531	3	3	0	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0007	3531	1	0	1	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0008	3531	1	0	0	0	0	1	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0009	3531	1	0	0	1	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0010	3531	1	0	0	0	1	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0011	3531	1	0	1	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	c0012	3531	1	0	1	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS2_chr3_45383576_45554407	0/0	c0001	2712	83	6	16	38	6	17	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/1	c0002	2712	81	15	17	31	5	12	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	1/0	c0003	2712	35	29	3	0	0	2	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0004	2712	10	5	2	2	0	1	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0005	2712	5	0	0	5	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0006	2712	5	5	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0007	2712	4	0	4	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0008	2712	2	0	2	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0009	2712	2	2	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0010	2712	2	2	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0011	2712	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0012	2712	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0013	2712	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0014	2712	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0015	2712	1	0	0	0	1	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0016	2712	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0017	2712	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0018	2712	1	0	1	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0019	2712	1	0	1	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0020	2712	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0021	2712	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0022	2712	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	c0023	2583	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LAS1L_chrX_65507582_65539787	1/1	c0001	2205	197	55	33	78	9	20	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	c0002	2205	1	1	0	0	0	0	copy fasta	LAS1L	chrX	65507582	65539787