JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAS1L_chrX_65507582_65539787	0/0	c0003	2204	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	c0004	2205	1	1	0	0	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	c0005	2206	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	c0006	2205	1	1	0	0	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	c0007	2205	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LASP1NB_chr17_38920614_38934381	1/1	c0001	78	422	90	74	198	14	44	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1_chr17_38865058_38926770	0/0	c0001	786	147	59	19	51	4	14	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	1/0	c0002	786	108	9	25	58	3	12	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0003	786	58	15	16	14	4	9	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0004	786	17	0	1	15	0	1	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/1	c0005	786	17	0	6	1	1	8	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0006	786	12	0	0	9	0	3	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0007	786	12	11	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0008	786	12	1	7	0	3	1	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0009	786	4	0	0	4	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0010	786	2	0	0	2	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0011	786	2	0	0	1	1	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0012	786	2	0	2	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0013	786	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0014	786	1	0	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	c0015	786	1	0	0	1	0	0	copy fasta	LASP1	chr17	38865058	38926770
LAT2_chr7_74205006_74234834	1/1	c0001	732	325	82	69	116	14	42	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0002	732	5	4	1	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0003	732	4	0	0	4	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0004	732	3	0	3	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0005	732	2	0	0	2	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0006	732	1	0	1	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0007	732	1	1	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0008	732	1	0	0	1	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0009	732	1	1	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	c0010	732	1	0	0	1	0	0	copy fasta	LAT2	chr7	74205006	74234834
LATS1_chr6_149653153_149723101	0/1	c0001	3393	130	38	17	58	6	10	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	1/0	c0002	3393	117	34	19	42	6	15	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0003	3393	7	7	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0004	3393	4	4	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0005	3393	2	0	0	2	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0006	3393	2	2	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0007	3393	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0008	3393	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0009	3393	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0010	3393	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0011	3393	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0012	3393	1	0	0	0	0	1	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0013	3393	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0014	3393	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0015	3393	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	c0016	3393	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS2_chr13_20968036_21066586	0/1	c0001	3273	88	4	22	49	4	8	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0002	3267	60	5	13	37	0	5	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0003	3267	30	6	7	11	0	6	copy fasta	LATS2	chr13	20968036	21066586