JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LATS2_chr13_20968036_21066586	0/0	c0004	3267	28	11	5	0	4	8	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0005	3267	26	7	4	11	1	3	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0006	3267	14	1	3	9	1	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0007	3267	7	7	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0008	3267	6	4	2	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0009	3267	6	6	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0010	3273	5	0	1	3	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0011	3273	5	5	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0012	3273	4	3	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0013	3267	4	0	0	4	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0014	3267	3	3	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	1/0	c0015	3267	3	2	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0016	3273	3	2	0	0	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0017	3267	2	1	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0018	3267	2	2	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0019	3267	2	1	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0020	3267	2	0	2	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0021	3267	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0022	3273	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0023	3267	1	0	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0024	3267	1	0	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0025	3267	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0026	3273	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0027	3267	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0028	3267	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0029	3279	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0030	3273	1	0	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0031	3273	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0032	3267	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0033	3273	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0034	3267	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0035	3267	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	c0036	3267	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LAT_chr16_28980052_28995784	1/1	c0001	702	338	80	64	148	11	33	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	c0002	702	94	9	16	51	5	13	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	c0003	702	1	1	0	0	0	0	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	c0004	702	1	0	0	1	0	0	copy fasta	LAT	chr16	28980052	28995784
LAX1_chr1_203760183_203781372	1/0	c0001	1197	261	38	55	135	9	23	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/1	c0002	1197	106	27	10	51	4	13	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0003	1197	7	6	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0004	1197	7	0	0	6	0	1	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0005	1197	6	5	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0006	1197	6	6	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0007	1197	5	4	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0008	1197	4	0	0	4	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0009	1197	3	3	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0010	1197	2	0	2	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0011	1197	2	0	0	2	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0012	1197	2	0	2	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0013	1197	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372