JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAX1_chr1_203760183_203781372	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0015	1197	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0016	1197	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0017	1197	1	0	0	0	1	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0018	1197	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0019	1197	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0020	1197	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0021	1197	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0022	1197	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	c0023	1197	1	0	0	0	0	1	copy fasta	LAX1	chr1	203760183	203781372
LAYN_chr11_111535720_111566745	0/1	c0001	1125	243	52	63	82	9	36	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0002	1125	14	13	1	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	1/0	c0003	1125	13	8	4	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0004	1125	9	9	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0005	1125	8	2	3	3	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0006	1125	3	0	0	3	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0007	1125	3	2	1	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0008	1125	2	2	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0009	1125	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0010	1125	1	0	0	0	1	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	c0011	1125	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LBHD1_chr11_62657817_62677267	1/1	c0001	792	351	86	78	131	14	40	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	c0002	792	3	3	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	c0003	792	2	2	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	c0004	792	1	0	0	1	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	c0005	792	1	0	0	1	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	c0006	792	1	0	0	1	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	c0007	792	1	1	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD2_chr14_103079210_103095027	0/0	c0001	327	186	21	38	92	7	28	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	1/1	c0002	327	173	52	25	81	3	10	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0003	327	51	8	13	12	6	12	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0004	327	10	9	1	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0005	327	4	0	4	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0006	327	3	2	1	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0007	327	2	2	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0008	327	1	1	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0009	327	1	0	0	1	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	c0010	327	1	1	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBH_chr2_30226534_30265028	1/1	c0001	318	378	74	67	178	15	42	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	c0002	318	17	16	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	c0003	318	1	0	0	0	1	0	copy fasta	LBH	chr2	30226534	30265028
LBP_chr20_38341482_38382013	0/1	c0001	1446	169	9	29	114	3	13	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0002	1446	54	17	20	10	4	3	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	1/0	c0003	1446	26	0	1	24	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0004	1446	18	12	2	0	0	4	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0005	1446	16	7	3	0	3	3	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0006	1446	16	1	3	6	0	6	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0007	1446	15	8	1	0	1	5	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0008	1446	13	12	1	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0009	1446	12	0	3	5	1	3	copy fasta	LBP	chr20	38341482	38382013