JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LBP_chr20_38341482_38382013	0/0	c0010	1446	7	1	1	3	0	2	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0011	1446	6	6	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0012	1446	5	2	3	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0013	1446	3	0	0	1	0	2	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0014	1446	3	2	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0015	1446	3	0	3	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0016	1446	2	0	0	0	0	2	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0017	1446	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0018	1446	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0019	1446	2	1	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0020	1446	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0021	1446	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0022	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0023	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0024	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0025	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0026	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0027	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0028	1446	1	0	1	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0029	1446	1	0	1	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0030	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0031	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0032	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0033	1446	1	0	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0034	1446	1	0	0	0	0	1	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0035	1446	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0036	1446	1	0	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	c0037	1446	1	0	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBR_chr1_225396502_225433038	0/0	c0001	1848	160	30	38	73	9	10	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0002	1848	54	5	11	27	0	11	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	1/1	c0003	1848	52	23	10	9	0	8	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0004	1848	32	27	4	1	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0005	1848	14	1	1	8	0	4	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0006	1848	4	0	0	3	0	1	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0007	1848	4	0	0	4	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0008	1848	3	3	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0009	1848	3	0	0	3	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0010	1848	2	0	0	2	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0011	1848	2	0	0	1	0	1	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0012	1848	1	0	0	0	0	1	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0013	1848	1	0	0	0	1	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0014	1848	1	0	1	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0015	1848	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0016	1848	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0017	1848	1	0	0	1	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0018	1848	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	c0019	1848	1	0	1	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBX1_chr10_101221994_101234463	1/1	c0001	846	390	84	67	184	11	42	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	c0002	846	36	5	13	13	3	2	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	c0003	846	5	5	0	0	0	0	copy fasta	LBX1	chr10	101221994	101234463