JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCE4A_chr1_152703160_152714434	1/1	c0002	300	88	0	7	63	5	11	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0003	318	30	1	2	23	0	4	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0004	318	21	21	0	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0005	318	14	0	14	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0006	318	8	8	0	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0007	318	3	3	0	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0008	317	2	0	0	2	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0009	318	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0010	314	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	c0011	318	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE5A_chr1_152505803_152517177	0/0	c0001	357	228	25	49	120	11	23	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	1/1	c0002	357	190	67	25	70	7	19	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	c0003	357	7	0	0	7	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	c0004	357	5	5	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	c0005	357	2	2	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	c0006	357	1	0	0	1	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	c0007	357	1	1	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE6A_chr1_152837856_152848983	1/1	c0001	243	393	91	68	181	16	35	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0002	243	1	1	0	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0003	243	1	0	0	1	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0004	243	1	0	0	1	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0005	243	1	0	1	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0006	243	1	0	1	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0007	243	1	0	0	1	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	c0008	243	1	0	0	0	0	1	copy fasta	LCE6A	chr1	152837856	152848983
LCE7A_chr1_152854996_152866252	1/1	c0001	288	373	77	64	180	8	42	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	c0002	288	17	16	1	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	c0003	288	5	5	0	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	c0004	288	2	0	0	2	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	c0005	288	1	0	1	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCK_chr1_32246265_32291165	1/1	c0001	1530	245	74	41	72	16	40	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0002	1530	15	0	15	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0003	1530	5	5	0	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0004	1530	3	2	1	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0005	1530	1	0	0	1	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0006	1530	1	1	0	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0007	1530	1	0	1	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0008	1530	1	0	0	1	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0009	1530	1	0	0	1	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	c0010	1530	1	0	0	1	0	0	copy fasta	LCK	chr1	32246265	32291165
LCLAT1_chr2_30442246_30649225	1/1	c0001	1131	283	70	51	118	13	29	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0002	1131	67	7	15	34	1	10	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0003	1131	7	7	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0004	1131	2	0	0	2	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0005	1131	2	2	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0006	1131	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0007	1131	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0009	1131	1	0	0	0	0	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	c0010	1131	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225