JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCMT1_chr16_25106742_25183228	1/1	c0001	1005	347	90	58	147	16	34	copy fasta	LCMT1	chr16	25106742	25183228
LCMT1_chr16_25106742_25183228	0/0	c0002	1005	1	0	0	1	0	0	copy fasta	LCMT1	chr16	25106742	25183228
LCMT2_chr15_43318649_43335573	1/1	c0001	2061	215	22	48	98	14	31	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0002	2061	144	57	11	67	0	9	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0003	2061	33	0	1	29	2	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0004	2061	7	0	7	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0005	2061	3	3	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0006	2061	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0007	2061	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0008	2061	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0009	2061	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0010	2061	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0011	2061	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0012	2061	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	c0013	2061	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCN10_chr9_136733170_136747940	1/1	c0001	603	300	80	65	96	13	44	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0002	603	84	14	17	47	3	3	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0003	603	2	0	0	2	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0004	603	2	2	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0005	603	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0006	603	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0007	603	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	c0008	603	1	0	0	0	0	1	copy fasta	LCN10	chr9	136733170	136747940
LCN12_chr9_136947273_136960497	0/1	c0001	579	258	60	45	116	7	29	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	1/0	c0002	579	97	13	30	27	8	18	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	c0003	579	23	14	3	5	1	0	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	c0004	579	1	0	0	1	0	0	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	c0005	579	1	1	0	0	0	0	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	c0006	573	1	0	0	1	0	0	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	c0007	579	1	0	0	0	0	1	copy fasta	LCN12	chr9	136947273	136960497
LCN15_chr9_136754634_136769518	0/1	c0001	555	232	47	51	95	13	25	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	1/0	c0002	555	101	30	16	28	5	21	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	c0003	555	12	10	1	1	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	c0004	555	7	3	0	4	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	c0005	555	2	2	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	c0006	555	1	1	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	c0007	555	1	1	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN1_chr9_135516440_135531540	1/1	c0001	531	412	83	81	185	15	46	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0002	531	7	0	0	6	1	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0003	531	4	3	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0004	531	3	3	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0005	531	2	1	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0006	531	2	2	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0007	531	2	2	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0008	531	1	0	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0009	531	1	1	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0010	531	1	0	0	1	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	c0011	531	1	1	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN2_chr9_128144453_128158453	1/1	c0001	597	405	90	68	185	18	42	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	c0002	597	2	2	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453