JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANK1_chr8_41648225_41802622	0/0	c0018	5643	3	1	0	2	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0019	5643	3	0	1	2	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0020	5643	3	3	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0021	5643	2	2	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0022	5643	2	0	2	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0023	5643	2	2	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0024	5643	2	2	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0025	5643	2	0	0	0	0	2	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0026	5643	2	0	0	2	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0027	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0028	5643	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0029	5643	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0030	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0031	5643	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0032	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0033	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0034	5643	1	0	0	0	0	1	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0035	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0036	5643	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0037	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0038	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0039	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0040	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0041	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0042	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0043	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0044	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0045	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0046	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0047	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0048	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0049	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0050	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0051	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0052	5643	1	0	0	0	1	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0053	5663	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0054	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0055	5643	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0056	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0057	5643	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	c0058	5643	1	0	0	0	0	1	copy fasta	ANK1	chr8	41648225	41802622
ANK2_chr4_113044653_113388736	1/1	c0001	11874	83	18	17	28	2	16	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0002	11874	27	19	2	4	1	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0003	11874	19	2	5	7	0	5	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0004	11874	6	5	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0005	11874	5	5	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0006	11874	3	1	2	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0007	11874	3	3	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0008	11874	2	2	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0009	11874	2	2	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736