JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCP1_chr13_46120923_46187177	0/0	c0003	1884	16	1	6	3	1	5	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0004	1884	2	0	0	2	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0005	1884	2	0	0	2	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0006	1884	1	1	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0007	1884	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0008	1884	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0009	1884	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0010	1884	1	0	1	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0011	1884	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0012	1884	1	1	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	c0013	1884	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP2_chr5_170241233_170302777	0/0	c0001	1602	99	19	17	54	3	6	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0002	1602	98	47	17	25	5	4	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0003	1602	96	12	19	47	3	15	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	1/1	c0004	1602	63	15	20	13	5	8	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0005	1602	11	0	3	3	2	3	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0006	1602	7	1	2	1	0	3	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0007	1602	2	0	0	2	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0008	1602	2	0	0	0	0	2	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0009	1602	1	0	0	1	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0010	1602	1	0	0	0	0	1	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0011	1602	1	0	1	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0012	1602	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0013	1602	1	0	1	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	c0014	1602	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCTL_chr15_66542532_66570998	1/1	c0001	1704	364	72	64	169	15	42	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0002	1704	40	4	10	23	1	2	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0003	1704	9	9	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0004	1704	4	0	0	4	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0005	1704	3	3	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0006	1704	3	3	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0007	1704	3	1	2	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0008	1704	2	0	0	0	0	2	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0009	1704	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0010	1704	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0011	1704	1	0	1	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0012	1704	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0013	1704	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	c0014	1704	1	0	1	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCT_chr2_135782850_135842184	0/0	c0001	5784	102	13	22	54	3	10	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0002	5784	72	15	9	38	0	10	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0003	5784	54	13	13	18	3	7	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0004	5784	21	0	2	19	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0005	5784	11	2	4	3	0	2	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0006	5784	10	9	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0007	5784	9	2	0	7	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/1	c0008	5784	7	0	3	1	0	2	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0009	5784	7	0	6	0	0	1	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0010	5784	5	3	2	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0011	5784	5	0	0	5	0	0	copy fasta	LCT	chr2	135782850	135842184