JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCT_chr2_135782850_135842184	0/0	c0012	5784	4	4	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0013	5784	4	0	0	4	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0014	5784	4	1	0	3	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0015	5784	4	0	0	2	0	2	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0016	5784	4	4	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0017	5784	3	3	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0018	5784	3	3	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0019	5784	3	0	0	0	0	3	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0020	5784	2	2	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0021	5784	2	1	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	1/0	c0022	5784	2	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0023	5784	2	0	0	2	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0024	5784	2	2	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0025	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0026	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0027	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0028	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0029	5784	1	0	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0030	5784	1	0	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0031	5784	1	0	0	0	0	1	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0032	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0033	5784	1	0	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0034	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0035	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0036	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0037	5784	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0038	5784	1	0	0	0	0	1	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0039	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0040	5784	1	0	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0041	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0042	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0043	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0044	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0045	5784	1	0	1	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0046	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0047	5784	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	c0048	5784	1	0	0	0	0	1	copy fasta	LCT	chr2	135782850	135842184
LDAF1_chr16_21153674_21185616	0/1	c0001	486	353	89	58	163	8	34	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0002	486	22	1	10	0	5	6	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0003	486	4	4	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	1/0	c0004	486	3	1	0	0	1	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0005	486	2	0	0	2	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0006	486	2	0	0	1	0	1	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0007	486	2	2	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0008	486	1	0	0	0	0	1	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	c0009	486	1	1	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAH_chr2_20679031_20828101	1/1	c0001	978	244	73	54	76	14	25	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	c0002	978	5	0	0	0	0	5	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	c0003	978	4	4	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	c0004	978	2	0	0	2	0	0	copy fasta	LDAH	chr2	20679031	20828101