JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LDAH_chr2_20679031_20828101	0/0	c0005	978	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	c0006	978	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	c0007	978	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDB1_chr10_102101489_102125368	1/1	c0001	1236	366	72	78	160	14	40	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	c0002	1236	7	6	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	c0003	1236	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	c0004	1236	1	0	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	c0005	1236	1	0	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB2_chr4_16496541_16903645	1/1	c0001	1122	151	50	32	39	8	20	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	c0002	1122	8	8	0	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	c0003	1122	1	1	0	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	c0004	1122	1	0	0	1	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	c0005	1122	1	1	0	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB3_chr10_86663511_86705050	1/0	c0001	852	355	63	72	161	18	40	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/1	c0002	852	18	14	3	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0003	852	10	0	0	10	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0004	852	8	8	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0005	852	5	4	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0006	852	3	2	1	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0007	852	2	0	2	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0008	852	2	0	0	0	0	2	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0009	852	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0010	852	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0011	852	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0012	852	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0013	852	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0014	852	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0015	852	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0016	852	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	c0017	852	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86741072	1/1	c0001	2184	278	64	62	104	13	33	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0002	2184	8	0	0	8	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0003	2184	7	7	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0004	2184	5	4	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0005	2184	4	2	0	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0006	2184	3	2	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0007	2184	2	2	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0008	2184	2	0	0	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0009	2184	2	2	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0010	2184	2	1	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0011	2184	2	2	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0012	2184	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0013	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0014	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0015	2184	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0016	2184	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0017	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0018	2184	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0019	2184	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0020	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072