JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LDB3_chr10_86663511_86741072	0/0	c0021	2184	1	0	0	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0022	2184	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0023	2184	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0024	2184	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0025	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0026	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0027	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	c0028	2184	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDHAL6A_chr11_18450856_18484601	1/0	c0001	999	388	89	71	179	14	34	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/1	c0002	999	26	6	6	9	2	2	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	c0003	999	3	0	3	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	c0004	995	1	0	0	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	c0005	999	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	c0006	999	1	0	0	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6B_chr15_59201843_59213588	0/0	c0001	1146	174	17	30	95	6	26	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	1/1	c0002	1146	154	22	42	69	6	13	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0003	1146	37	11	6	13	3	4	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0004	1146	32	11	6	12	1	2	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0005	1146	16	0	0	16	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0006	1146	13	13	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0007	1146	5	5	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0008	1146	5	5	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0009	1146	4	4	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0010	1146	3	0	1	0	2	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0011	1146	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0012	1146	1	0	0	1	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0013	1146	1	0	0	0	0	1	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0014	1146	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	c0015	1146	1	0	1	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHA_chr11_18389563_18413425	0/0	c0001	999	186	31	42	80	7	26	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	1/0	c0002	999	176	63	19	77	5	11	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/1	c0003	999	23	0	8	8	2	4	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	c0004	999	3	0	0	3	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	c0005	999	1	0	1	0	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	c0006	999	1	0	0	0	0	1	copy fasta	LDHA	chr11	18389563	18413425
LDHB_chr12_21630342_21662842	0/1	c0001	1005	303	71	68	110	14	39	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	1/0	c0002	1005	14	13	0	0	0	0	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	c0003	1005	7	7	0	0	0	0	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	c0004	1005	1	1	0	0	0	0	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	c0005	1005	1	0	0	0	0	1	copy fasta	LDHB	chr12	21630342	21662842
LDHC_chr11_18407318_18457063	0/1	c0001	999	327	78	58	152	8	30	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0002	999	9	9	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0003	999	2	0	0	2	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0004	999	2	2	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0005	999	2	2	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0006	999	2	0	2	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0007	999	1	1	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0008	999	1	0	0	1	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	1/0	c0009	999	1	0	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	c0010	999	1	0	0	1	0	0	copy fasta	LDHC	chr11	18407318	18457063