JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LDHD_chr16_75106864_75121780	1/1	c0001	1455	424	88	67	205	18	44	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0002	1455	7	0	3	4	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0003	1455	4	4	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0004	1455	3	0	3	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0005	1455	3	0	1	0	0	2	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0006	1455	1	0	1	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0007	1455	1	0	1	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0008	1455	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0009	1455	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0010	1455	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0011	1455	1	0	1	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0012	1455	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0013	1455	1	0	1	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0014	1455	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0015	1455	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0016	1455	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0017	1455	1	0	0	0	0	1	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0018	1455	1	0	0	0	0	1	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0019	1455	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0020	1455	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0021	1455	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	c0022	1455	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDLRAD1_chr1_54002298_54023186	1/1	c0001	618	372	89	66	165	16	34	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0002	618	10	0	0	10	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0003	618	7	0	0	7	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0004	618	6	6	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0005	618	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0006	618	1	0	0	0	0	1	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0007	618	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0008	589	1	0	0	0	0	1	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	c0009	618	1	1	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD2_chr1_21807265_21830225	0/0	c0001	819	285	44	56	136	15	34	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/1	c0002	819	80	10	11	49	2	7	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	1/0	c0003	819	79	42	16	13	1	6	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0004	819	2	0	0	2	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0005	819	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0006	819	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0007	819	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0008	819	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0009	819	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0010	819	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0011	819	1	0	0	0	0	1	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	c0012	819	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD3_chr11_35939062_36237136	1/1	c0001	1038	142	42	27	50	2	19	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0002	1038	70	28	13	16	4	9	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0003	1038	8	3	2	1	0	2	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0004	1038	5	2	1	2	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0005	1038	5	4	1	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0006	1038	1	0	0	1	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136