JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LDLRAD3_chr11_35939062_36237136	0/0	c0008	1038	1	0	0	1	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0009	1038	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0010	1038	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	c0011	1038	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD4_chr18_13213760_13657751	1/1	c0001	921	170	66	24	52	10	16	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	c0002	921	6	6	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	c0003	921	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	c0004	921	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAP1_chr1_25538606_25573886	0/0	c0001	927	159	31	31	69	4	24	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	1/1	c0002	927	137	13	28	68	7	19	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	c0003	927	57	46	9	1	0	1	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	c0004	927	4	4	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	c0005	927	3	0	2	0	1	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	c0006	927	2	2	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	c0007	927	1	1	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	c0008	927	1	1	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLR_chr19_11084463_11138820	0/0	c0001	2583	76	10	11	48	1	6	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0002	2583	58	7	17	18	2	14	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0003	2583	55	10	1	41	0	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0004	2583	49	23	3	20	0	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0005	2583	23	15	6	0	2	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0006	2583	22	7	6	6	0	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	1/1	c0007	2583	21	4	2	7	3	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0008	2583	17	4	8	0	2	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0009	2583	5	0	3	1	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0010	2583	4	0	0	0	0	4	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0011	2583	3	0	0	3	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0012	2583	3	0	0	3	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0013	2583	3	3	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0014	2583	2	2	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0015	2583	2	2	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0016	2583	2	0	0	2	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0017	2583	2	0	0	2	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0018	2583	2	2	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0019	2583	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0020	2583	1	0	1	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0021	2583	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0022	2583	1	0	1	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0023	2583	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0024	2583	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0025	2583	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0026	2583	1	0	1	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	c0027	2583	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDOC1_chrX_141168235_141182129	1/1	c0001	441	327	78	63	141	9	34	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	c0002	441	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LEAP2_chr5_132868668_132880046	1/1	c0001	234	423	93	69	203	14	42	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	c0002	234	6	5	1	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	c0003	234	5	0	0	5	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	c0004	234	2	0	2	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LECT2_chr5_135941904_135959983	0/1	c0001	456	267	48	42	141	10	25	copy fasta	LECT2	chr5	135941904	135959983