JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LECT2_chr5_135941904_135959983	1/0	c0002	456	180	45	22	91	8	13	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	c0003	456	3	0	3	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	c0004	456	2	1	1	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LEF1_chr4_108042548_108173932	1/1	c0001	1200	251	86	44	74	16	29	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0002	1200	3	2	1	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0003	1200	3	0	0	3	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0004	1200	2	0	0	1	0	1	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0005	1200	1	0	1	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0006	1200	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0007	1200	1	0	0	1	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0008	1200	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEFTY1_chr1_225881282_225894146	1/0	c0001	1101	170	33	27	83	5	21	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0002	1101	113	13	28	54	6	12	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/1	c0003	1101	53	8	14	20	5	5	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0004	1101	24	0	1	20	0	3	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0005	1101	23	23	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0006	1101	23	4	0	18	0	1	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0007	1101	17	0	4	13	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0008	1101	13	10	3	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0009	1101	6	3	0	3	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0010	1101	3	3	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0011	1101	1	0	1	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0012	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0013	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0014	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0015	1101	1	1	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0016	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0017	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0018	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	c0019	1101	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY2_chr1_225931603_225946220	1/1	c0001	1101	377	69	71	177	18	40	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0002	1101	31	0	10	19	0	2	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0003	1101	13	13	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0004	1101	11	10	1	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0005	1101	7	1	0	6	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0006	1101	6	0	0	6	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0007	1101	5	5	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0008	1101	1	0	0	0	0	1	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0009	1101	1	0	0	0	0	1	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0010	1101	1	0	0	1	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	c0011	1101	1	0	0	1	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEKR1_chr3_156821353_157051129	1/1	c0001	2079	132	15	36	60	6	13	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0002	2079	34	12	8	4	4	6	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0003	2079	30	4	2	20	0	4	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0004	2079	25	23	2	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0005	2079	13	13	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0006	2079	3	1	0	0	2	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0007	2079	2	0	2	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0008	2079	1	0	0	0	0	1	copy fasta	LEKR1	chr3	156821353	157051129