JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LEKR1_chr3_156821353_157051129	0/0	c0009	2079	1	1	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0010	2079	1	1	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0011	2079	1	1	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	c0012	2079	1	1	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LELP1_chr1_153198430_153210120	1/1	c0001	297	462	90	82	224	16	48	copy fasta	LELP1	chr1	153198430	153210120
LELP1_chr1_153198430_153210120	0/0	c0002	297	2	0	0	2	0	0	copy fasta	LELP1	chr1	153198430	153210120
LEMD1_chr1_205376378_205427056	1/1	c0001	546	318	72	69	127	12	36	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0002	546	26	0	2	16	1	7	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0003	546	16	13	3	0	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0004	546	12	0	0	12	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0005	546	11	8	1	1	1	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0006	546	2	0	0	2	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0007	546	1	0	1	0	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0008	546	1	1	0	0	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0009	546	1	0	0	0	0	1	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0010	546	1	0	0	1	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	c0011	546	1	0	0	1	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD2_chr6_33766213_33794130	1/1	c0001	1512	349	91	65	146	16	29	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0002	1512	38	1	9	21	2	5	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0003	1512	7	6	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0004	1512	2	0	0	2	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0005	1512	1	1	0	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0006	1512	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0007	1512	1	0	0	1	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD3_chr12_65164583_65253355	1/1	c0001	2736	292	80	46	120	9	35	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0002	2736	45	0	7	31	2	5	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0003	2736	43	1	1	39	1	1	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0004	2736	6	6	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0005	2736	4	0	0	4	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0006	2736	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0007	2736	1	0	0	0	0	1	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0008	2736	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0009	2736	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0010	2736	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0011	2736	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0012	2736	1	0	1	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	c0013	2736	1	0	1	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LENEP_chr1_154988586_154999315	1/1	c0001	186	295	79	62	98	14	40	copy fasta	LENEP	chr1	154988586	154999315
LENEP_chr1_154988586_154999315	0/0	c0002	186	11	11	0	0	0	0	copy fasta	LENEP	chr1	154988586	154999315
LENEP_chr1_154988586_154999315	0/0	c0003	186	1	1	0	0	0	0	copy fasta	LENEP	chr1	154988586	154999315
LENEP_chr1_154988586_154999315	0/0	c0004	186	1	1	0	0	0	0	copy fasta	LENEP	chr1	154988586	154999315
LENG1_chr19_54150161_54164721	0/1	c0001	795	410	96	76	177	18	42	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0002	795	4	0	3	0	0	1	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0003	795	2	0	0	2	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0004	795	1	0	0	0	0	1	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0005	795	1	1	0	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0006	795	1	0	1	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0007	795	1	0	0	1	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	c0008	795	1	1	0	0	0	0	copy fasta	LENG1	chr19	54150161	54164721