JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANK2_chr4_113044653_113388736	0/0	c0010	11874	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0011	11874	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0012	11874	1	0	0	0	1	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0013	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0014	11874	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0015	11874	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0016	11874	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0017	11874	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0018	11874	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0019	11874	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0020	11874	1	0	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0021	11874	1	0	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0022	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0023	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0024	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0025	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0026	11874	1	0	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0027	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0028	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0029	11874	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0030	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0031	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0032	11874	1	0	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0033	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0034	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0035	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0036	11874	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	c0037	11874	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK3_chr10_60021298_60394875	1/0	c0001	13134	54	15	5	25	2	6	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0002	13134	9	0	0	8	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0003	13134	7	0	3	3	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0004	13134	7	0	3	1	1	2	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0005	13134	5	0	1	2	0	2	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0006	13134	4	4	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0007	13134	4	0	1	3	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0008	13134	3	0	0	0	1	2	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0009	13134	3	2	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0010	13134	3	3	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0011	13134	3	1	0	0	0	2	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0012	13134	2	1	0	0	1	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0013	13134	2	0	0	1	1	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0014	13134	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0015	13134	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0016	13134	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0017	13134	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0018	13134	2	0	2	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0019	13134	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0020	13134	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0021	13134	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0022	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875