JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LENG8_chr19_54444199_54467016	0/0	c0001	2403	202	64	38	72	7	21	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/1	c0002	2403	178	22	28	101	7	19	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0003	2403	15	1	7	2	0	5	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0004	2403	8	0	2	6	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0005	2403	7	6	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0006	2403	3	0	0	3	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0007	2403	2	0	0	2	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0008	2403	2	2	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0009	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0010	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0011	2403	1	0	0	0	0	1	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0012	2403	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0013	2403	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0014	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0015	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0016	2403	1	0	1	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0017	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0018	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0019	2403	1	0	0	0	0	1	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0020	2403	1	0	0	0	0	1	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0021	2403	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	c0022	2403	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG9_chr19_54456732_54468778	0/1	c0001	1440	148	8	28	92	7	12	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0002	1437	145	40	23	58	5	19	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0003	1440	54	13	10	22	0	9	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0004	1440	14	14	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0005	1440	6	6	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0006	1440	6	2	3	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0007	1440	6	4	2	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0008	1440	5	0	0	4	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0009	1437	5	0	4	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0010	1437	5	1	2	0	0	2	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0011	1437	3	0	2	0	1	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0012	1440	3	3	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0013	1437	2	2	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0014	1440	2	2	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0015	1440	2	0	1	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0016	1437	1	1	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0017	1437	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0018	1437	1	1	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0019	1440	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0020	1440	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0021	1440	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0022	1437	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0023	1448	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0024	1440	1	0	0	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0025	1437	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0026	1437	1	0	0	0	1	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0027	1440	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0028	1437	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778