JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LENG9_chr19_54456732_54468778	0/0	c0029	1437	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	c0030	1437	1	1	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LEO1_chr15_51933025_51976778	1/1	c0001	2001	351	87	76	145	12	29	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0002	2001	26	3	1	22	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0003	2001	2	0	0	0	0	2	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0004	2001	2	0	0	2	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0005	2001	1	0	0	0	0	1	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0006	2001	1	1	0	0	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0007	2001	1	0	0	1	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0008	2001	1	0	0	1	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0009	2001	1	0	0	1	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0010	2001	1	0	1	0	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	c0011	2001	1	1	0	0	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEPROTL1_chr8_30090408_30113524	1/1	c0001	396	352	91	59	153	13	34	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	c0002	396	64	3	7	47	3	4	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROT_chr1_65415668_65441007	1/1	c0001	396	389	95	79	145	18	50	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	c0002	396	12	0	1	11	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	c0003	396	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPR_chr1_65415668_65646559	1/0	c0001	3498	51	10	16	10	3	11	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0002	3498	46	8	9	21	6	2	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/1	c0003	3498	20	0	8	5	3	3	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0004	3498	16	4	2	3	0	7	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0005	3498	15	1	4	3	4	3	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0006	3498	15	3	10	0	1	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0007	3498	10	9	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0008	3498	7	7	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0009	3498	6	2	1	1	0	2	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0010	3498	6	1	3	1	1	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0011	3498	5	5	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0012	3498	4	4	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0013	3498	2	1	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0014	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0015	3498	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0016	3498	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0017	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0018	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0019	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0020	3498	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0021	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0022	3498	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0023	3498	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0024	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0025	3498	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	c0026	3498	1	0	0	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEP_chr7_128236278_128262629	1/0	c0001	504	362	85	73	140	18	45	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	c0002	504	17	2	0	14	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	c0003	504	10	8	2	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	c0004	504	3	3	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	c0005	504	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	c0006	518	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629