JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LEP_chr7_128236278_128262629	0/0	c0007	504	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LETM1_chr4_1806479_1861156	0/1	c0001	2220	160	44	37	45	9	24	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	1/0	c0002	2220	8	7	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0003	2220	7	3	1	3	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0004	2220	4	4	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0005	2220	3	2	1	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0006	2220	2	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0007	2220	2	0	1	0	0	1	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0008	2220	2	0	0	0	2	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0009	2220	2	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0010	2220	2	0	2	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0011	2220	1	0	0	0	0	1	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0012	2220	1	0	0	0	1	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0013	2220	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0014	2220	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0015	2220	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0016	2220	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0017	2220	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	c0018	2220	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM2_chr8_38381476_38414527	1/1	c0001	1476	357	66	71	171	14	33	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0002	1476	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0003	1476	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0004	1476	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0005	1476	1	0	1	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0006	1476	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0007	1476	1	0	0	0	0	1	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	c0008	1476	1	0	0	1	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETMD1_chr12_51043327_51065424	0/1	c0001	1083	272	44	40	161	6	20	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	1/0	c0002	1083	139	46	38	27	6	21	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	c0003	1083	2	2	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	c0004	1083	1	0	0	0	0	1	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	c0005	1083	1	1	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	c0006	1083	1	1	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LEUTX_chr19_39773854_39791291	1/1	c0001	597	456	90	70	231	16	47	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	c0002	597	12	0	9	0	2	1	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	c0003	597	4	4	0	0	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	c0004	597	2	0	0	2	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	c0005	597	1	0	1	0	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	c0006	597	1	0	0	1	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEXM_chr1_54801063_54847252	0/1	c0001	1257	114	25	19	39	8	22	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	1/0	c0002	1257	101	21	25	40	3	11	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0003	1257	58	4	12	36	4	2	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0004	1257	29	0	2	27	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0005	1257	20	5	4	9	1	1	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0006	1257	14	1	0	13	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0007	1257	6	1	0	5	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0008	1257	6	6	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0009	1257	5	0	0	4	0	1	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0010	1257	5	5	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0011	1257	5	0	3	1	0	1	copy fasta	LEXM	chr1	54801063	54847252