JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LEXM_chr1_54801063_54847252	0/0	c0012	1257	5	0	0	5	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0013	1257	3	3	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0014	1257	3	3	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0015	1257	1	0	0	0	0	1	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0016	1257	1	0	0	0	0	1	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0017	1257	1	0	1	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0018	1257	1	0	0	1	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0019	1257	1	1	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0020	1257	1	0	0	1	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0021	1257	1	1	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	c0022	1257	1	0	0	1	0	0	copy fasta	LEXM	chr1	54801063	54847252
LFNG_chr7_2514774_2533429	1/0	c0001	1140	352	91	67	142	16	35	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	c0002	1140	53	6	9	31	0	7	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/1	c0003	1140	5	0	4	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	c0004	1140	2	2	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	c0005	1140	1	0	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	c0006	1140	1	1	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LGALS12_chr11_63501084_63521772	0/0	c0001	945	402	70	73	197	16	46	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0002	945	9	9	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0003	945	6	5	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0004	945	5	5	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0005	945	2	2	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0006	945	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0007	945	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0008	945	1	0	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0009	945	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0010	945	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0011	945	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0012	945	1	0	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0013	945	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0014	945	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	c0015	945	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS13_chr19_39597524_39612474	1/1	c0001	420	443	94	68	220	15	44	copy fasta	LGALS13	chr19	39597524	39612474
LGALS13_chr19_39597524_39612474	0/0	c0002	420	1	0	0	0	1	0	copy fasta	LGALS13	chr19	39597524	39612474
LGALS13_chr19_39597524_39612474	0/0	c0003	420	1	0	1	0	0	0	copy fasta	LGALS13	chr19	39597524	39612474
LGALS13_chr19_39597524_39612474	0/0	c0004	420	1	0	1	0	0	0	copy fasta	LGALS13	chr19	39597524	39612474
LGALS14_chr19_39699481_39714444	0/1	c0001	420	236	62	47	89	11	26	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	1/0	c0002	420	198	22	31	122	6	16	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0003	420	9	7	0	0	0	2	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0004	420	3	3	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0005	420	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0006	420	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0007	420	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0008	420	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0009	420	1	0	0	0	1	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	c0010	420	1	0	0	1	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS16_chr19_39650913_39665647	1/1	c0001	429	424	69	74	215	18	46	copy fasta	LGALS16	chr19	39650913	39665647
LGALS16_chr19_39650913_39665647	0/0	c0002	429	16	16	0	0	0	0	copy fasta	LGALS16	chr19	39650913	39665647
LGALS16_chr19_39650913_39665647	0/0	c0003	429	1	0	0	1	0	0	copy fasta	LGALS16	chr19	39650913	39665647
LGALS16_chr19_39650913_39665647	0/0	c0004	429	1	1	0	0	0	0	copy fasta	LGALS16	chr19	39650913	39665647