JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LGALS1_chr22_37670636_37684802	1/1	c0001	408	418	92	71	192	18	43	copy fasta	LGALS1	chr22	37670636	37684802
LGALS1_chr22_37670636_37684802	0/0	c0002	408	1	0	1	0	0	0	copy fasta	LGALS1	chr22	37670636	37684802
LGALS1_chr22_37670636_37684802	0/0	c0003	408	1	0	0	0	0	1	copy fasta	LGALS1	chr22	37670636	37684802
LGALS2_chr22_37565248_37585087	1/1	c0001	399	410	76	77	191	18	46	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0002	399	29	6	0	23	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0003	399	12	11	1	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0004	399	3	0	0	3	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0005	399	2	0	0	0	0	2	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0006	399	1	1	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0007	399	1	1	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0008	399	1	1	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	c0009	399	1	0	0	1	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS3BP_chr17_78966255_78984923	0/1	c0001	1758	353	78	65	160	12	37	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	1/0	c0002	1758	56	2	4	42	1	6	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0003	1758	18	4	5	9	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0004	1758	4	4	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0005	1758	4	4	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0006	1758	2	0	0	0	0	2	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0007	1758	2	2	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0008	1758	2	0	0	2	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0009	1758	2	2	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0010	1758	2	2	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0011	1758	1	0	0	0	1	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0012	1758	1	0	0	1	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0013	1758	1	1	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0014	1758	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0015	1758	1	1	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0016	1758	1	0	0	0	0	1	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0017	1758	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0018	1758	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0019	1758	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0020	1758	1	0	0	0	0	1	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	c0021	1758	1	0	0	0	0	1	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3_chr14_55124252_55150423	1/1	c0001	753	131	6	28	74	8	13	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0002	753	114	39	11	57	0	7	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0003	753	98	28	12	42	6	10	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0004	753	15	0	8	0	0	7	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0005	753	8	8	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0006	753	4	4	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0007	753	1	0	1	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0008	753	1	0	0	1	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0009	753	1	0	0	0	0	1	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0010	753	1	0	0	1	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0011	753	1	1	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	c0012	753	1	0	0	1	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS4_chr19_38796674_38817945	1/1	c0001	972	412	79	78	195	16	42	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0002	972	6	6	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0003	972	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0004	972	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0005	972	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945