JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LGALS4_chr19_38796674_38817945	0/0	c0006	972	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0007	972	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0008	972	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0009	972	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	c0010	972	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS8_chr1_236518982_236557981	0/1	c0001	954	155	17	33	82	7	15	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	1/0	c0002	954	147	30	17	70	4	25	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0003	954	79	23	9	43	1	3	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0004	954	24	17	4	0	1	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0005	954	24	3	9	10	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0006	953	5	0	1	3	1	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0007	954	3	3	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0008	954	3	0	0	3	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0009	954	2	1	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0010	954	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0011	954	1	0	0	0	0	1	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0012	954	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0013	954	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0014	954	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0015	954	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0016	954	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	c0017	954	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS9B_chr17_20444395_20472539	0/0	c0001	1073	185	38	34	87	2	24	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0002	1071	46	9	17	15	3	2	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0003	1071	37	0	19	3	6	9	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	1/0	c0004	1071	28	4	1	22	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0005	1071	27	0	0	26	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0006	1071	25	2	3	13	1	6	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0007	1073	18	11	2	3	2	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0008	1073	12	4	3	0	3	2	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0009	1073	8	1	3	4	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0010	1073	5	1	1	3	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0011	1073	4	4	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0012	1071	4	2	2	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0013	1073	3	3	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0014	1073	3	3	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0015	1071	3	1	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0016	1073	2	2	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0017	1073	2	0	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0018	1071	2	0	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0019	1071	2	0	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0020	1073	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0021	1073	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0022	1073	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0023	1073	1	0	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0024	1073	1	0	0	0	1	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0025	1073	1	0	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0026	1073	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0027	1073	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0028	1073	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539