JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LGALS9B_chr17_20444395_20472539	0/0	c0029	1071	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0030	1071	1	0	1	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0031	1071	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0032	1071	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0033	1071	1	0	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0034	1071	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0035	1071	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	c0036	1071	1	0	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9C_chr17_18471789_18499945	1/0	c0001	1071	194	26	27	122	3	15	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0002	1071	71	11	15	36	2	7	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0003	1071	4	4	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0004	1071	4	3	1	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0005	1071	3	3	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0006	1071	2	0	0	1	0	1	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0007	1071	2	0	0	0	0	2	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0008	1071	2	0	0	0	1	1	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0009	1071	2	0	0	0	0	2	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0010	1071	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0011	1071	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0012	1071	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0013	1071	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0014	1071	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0015	1071	1	0	1	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	c0016	1071	1	0	0	1	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9_chr17_27626188_27654560	1/1	c0001	1068	303	67	40	149	12	33	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0002	1068	89	7	22	48	4	8	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0003	1068	15	7	6	0	0	2	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0004	1068	12	0	9	0	2	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0005	1068	7	0	2	5	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0006	1068	5	5	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0007	1068	4	2	1	1	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0008	1068	4	0	0	4	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0009	1068	2	2	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0010	1068	1	0	0	0	0	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0011	1068	1	1	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0012	1068	1	1	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0013	1068	1	0	0	1	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	c0014	1068	1	0	0	0	0	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALSL_chr2_64449162_64466381	1/1	c0001	519	419	93	78	181	17	48	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	c0002	519	1	0	0	0	1	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	c0003	519	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	c0004	519	1	0	0	1	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGI1_chr10_93752936_93803159	0/1	c0001	1674	364	84	73	154	16	36	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	1/0	c0002	1674	6	3	2	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	c0003	1674	2	2	0	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	c0004	1674	1	0	0	1	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	c0005	1674	1	1	0	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	c0006	1674	1	0	0	1	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	c0007	1674	1	0	1	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI2_chr4_24993847_25035946	0/0	c0001	1638	307	76	39	161	5	26	copy fasta	LGI2	chr4	24993847	25035946