JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LGI2_chr4_24993847_25035946	0/0	c0002	1638	72	15	9	37	3	8	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	1/1	c0003	1638	38	6	13	5	4	8	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0004	1638	15	1	8	3	2	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0005	1638	7	0	0	7	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0006	1638	3	0	2	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0007	1638	2	0	1	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0008	1638	2	0	2	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0009	1638	1	0	0	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0010	1638	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0011	1638	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0012	1638	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0013	1638	1	0	0	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0014	1638	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0015	1638	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	c0016	1638	1	0	0	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI3_chr8_22141830_22161806	1/1	c0001	1647	374	75	78	155	17	47	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0002	1647	7	7	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0003	1647	5	5	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0004	1647	3	3	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0005	1647	3	1	2	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0006	1647	3	3	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0007	1647	2	0	0	1	0	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0008	1647	2	0	0	2	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0009	1647	1	0	0	0	0	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0010	1647	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0011	1647	1	0	0	0	1	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0012	1647	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0013	1647	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0014	1647	1	0	0	0	0	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0015	1647	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0016	1647	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	c0017	1647	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI4_chr19_35119513_35140059	0/1	c0001	1614	239	41	51	128	7	11	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0002	1614	111	28	17	38	2	26	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0003	1614	12	11	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	1/0	c0004	1614	9	0	2	0	3	3	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0005	1614	5	0	0	2	0	3	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0006	1614	4	3	0	1	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0007	1614	4	0	1	0	2	1	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0008	1614	4	3	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0009	1614	3	0	0	3	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0010	1614	1	1	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0011	1614	1	0	0	1	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0012	1614	1	1	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0013	1614	1	0	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0014	1614	1	0	0	1	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0015	1614	1	1	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	c0016	1614	1	1	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGMN_chr14_92698809_92753627	0/1	c0001	1302	224	43	29	113	10	28	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0002	1302	63	11	20	16	7	9	copy fasta	LGMN	chr14	92698809	92753627