JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LGMN_chr14_92698809_92753627	0/0	c0003	1302	58	19	11	25	0	3	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0004	1302	25	1	6	18	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0005	1302	22	11	8	2	1	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0006	1302	4	2	0	2	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0007	1302	4	0	0	4	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0008	1302	3	3	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0009	1302	2	1	1	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0010	1302	2	2	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0011	1302	2	0	0	0	0	2	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0012	1302	2	0	2	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0013	1302	2	1	1	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0014	1302	2	2	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0015	1302	1	1	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0016	1302	1	0	0	1	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0017	1302	1	1	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	1/0	c0018	1302	1	0	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	c0019	1302	1	0	0	1	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGR4_chr11_27360961_27477790	0/0	c0001	2856	128	24	24	60	7	13	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/1	c0002	2856	82	23	11	38	4	5	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0003	2856	10	9	1	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0004	2856	6	6	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0005	2856	4	4	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0006	2856	3	2	1	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0007	2856	2	1	1	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0008	2856	2	2	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0009	2856	2	0	0	0	0	2	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0010	2856	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	1/0	c0011	2856	1	0	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0012	2856	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0013	2856	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	c0014	2856	1	0	0	0	1	0	copy fasta	LGR4	chr11	27360961	27477790
LGR5_chr12_71434798_71591310	0/1	c0001	2724	153	24	37	65	9	17	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	1/0	c0002	2724	18	11	2	1	1	2	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0003	2724	13	8	2	2	0	1	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0004	2724	2	0	0	2	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0005	2724	2	2	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0006	2724	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0007	2724	1	0	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0008	2724	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0009	2724	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0010	2724	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0011	2724	1	0	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0012	2724	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0013	2724	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0014	2724	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0015	2724	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0016	2724	1	0	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	c0017	2724	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR6_chr1_202188799_202324761	0/1	c0001	2904	116	16	33	47	3	16	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	1/0	c0002	2904	79	21	15	30	5	7	copy fasta	LGR6	chr1	202188799	202324761