JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LGR6_chr1_202188799_202324761	0/0	c0003	2904	14	12	2	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0004	2904	13	1	3	5	2	2	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0005	2904	4	0	0	4	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0006	2904	4	4	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0007	2904	2	0	0	2	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0008	2904	2	0	0	2	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0009	2904	2	2	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0010	2904	2	0	0	2	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0011	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0012	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0013	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0014	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0015	2904	1	0	0	0	0	1	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0016	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0017	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0018	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0019	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0020	2904	1	0	0	0	0	1	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0021	2904	1	0	0	0	0	1	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0022	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0023	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0024	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0025	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0026	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0027	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0028	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0029	2904	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0030	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0031	2904	1	0	1	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0032	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0033	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	c0034	2904	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGSN_chr6_63270951_63324983	1/1	c0001	1530	271	53	54	130	10	22	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0002	1530	10	10	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0003	1530	8	8	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0004	1530	7	0	5	0	2	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0005	1530	3	1	2	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0006	1530	3	3	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0007	1530	2	1	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0008	1530	2	0	0	2	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0009	1530	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0010	1530	2	0	0	2	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0011	1530	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	c0012	1530	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LHB_chr19_49010980_49022091	1/0	c0001	426	179	17	28	105	4	24	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/1	c0002	426	156	30	36	57	10	22	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0003	426	38	35	2	0	0	1	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0004	426	16	2	4	9	1	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0005	426	5	0	2	0	1	2	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0006	426	4	4	0	0	0	0	copy fasta	LHB	chr19	49010980	49022091