JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LHB_chr19_49010980_49022091	0/0	c0007	426	4	3	1	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0008	426	3	2	1	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0009	426	1	1	0	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0010	426	1	1	0	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0011	426	1	0	0	0	0	1	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0012	426	1	1	0	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	c0013	426	1	0	0	1	0	0	copy fasta	LHB	chr19	49010980	49022091
LHCGR_chr2_48681774_48760724	0/0	c0001	2100	213	16	43	132	7	15	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	1/1	c0002	2100	108	53	17	15	3	18	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0003	2106	17	8	6	0	2	1	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0004	2106	15	3	7	0	0	5	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0005	2100	4	2	0	1	0	1	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0006	2100	4	0	0	2	0	2	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0007	2100	3	1	2	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0008	2106	3	3	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0009	2100	2	2	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0010	2100	2	2	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0011	2100	1	1	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0012	2100	1	0	1	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	c0013	2106	1	1	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHFPL1_chrX_112625648_112684938	1/1	c0001	663	182	24	32	97	7	20	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	c0002	663	51	42	9	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	c0003	663	9	9	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	c0004	663	2	2	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	c0005	663	1	1	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL2_chr5_78480230_78653772	0/1	c0001	687	168	66	38	47	7	9	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	1/0	c0002	687	72	10	19	28	5	9	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	c0003	687	9	8	1	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	c0004	687	2	0	0	2	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	c0005	687	2	0	0	2	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	c0006	687	1	0	0	1	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL3_chr7_104323603_104913561	0/0	c0001	711	79	19	24	22	8	6	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	c0002	711	6	6	0	0	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	c0003	711	1	1	0	0	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL4_chr3_9493361_9558822	1/1	c0001	744	353	88	65	145	16	37	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	c0002	744	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	c0003	744	2	0	1	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	c0004	744	1	0	0	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	c0005	744	1	0	0	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	c0006	744	1	0	0	0	0	1	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL5_chr6_35800352_35829070	1/1	c0001	660	383	95	70	163	13	40	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	c0002	660	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	c0003	660	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	c0004	660	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL6_chr13_39337892_39608193	0/0	c0001	603	220	62	35	101	4	18	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	c0002	603	18	17	1	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	c0003	603	1	1	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	c0004	603	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	c0005	603	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	c0006	603	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193