JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LHX4_chr1_180225264_180283984	0/0	c0013	1173	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0014	1173	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0015	1173	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0016	1173	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX5_chr12_113457033_113476871	1/1	c0001	1209	390	87	76	171	15	39	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	c0002	1209	3	0	0	1	1	1	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	c0003	1209	2	0	0	0	0	2	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	c0004	1209	1	1	0	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX6_chr9_122197582_122233957	1/1	c0001	1179	425	92	75	199	16	41	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	c0002	1179	5	2	0	0	0	3	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	c0003	1179	3	3	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	c0004	1179	2	0	0	2	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	c0005	1179	2	1	1	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	c0006	1179	1	0	0	1	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX8_chr1_75129388_75166533	1/1	c0001	1041	180	43	61	46	8	20	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	c0002	1041	125	48	20	28	6	23	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	c0003	1041	2	2	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	c0004	1041	2	2	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	c0005	1041	2	2	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	c0006	1041	2	1	1	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	c0007	1041	1	0	0	0	0	1	copy fasta	LHX8	chr1	75129388	75166533
LHX9_chr1_197912372_197940478	1/1	c0001	1194	288	61	49	134	11	31	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0002	1194	116	21	27	56	1	11	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0003	1194	8	6	2	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0004	1194	4	0	0	4	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0005	1194	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0006	1194	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0007	1194	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LIAS_chr4_39454056_39484506	1/1	c0001	1119	392	93	75	173	11	38	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	c0002	1119	24	0	2	20	1	1	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	c0003	1119	6	0	1	0	2	3	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	c0004	1119	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	c0005	1119	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAT1_chr17_405325_419666	1/1	c0001	1272	156	8	42	80	9	15	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0002	1272	75	17	12	35	0	11	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0003	1242	54	20	2	15	4	13	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0004	1332	44	5	0	38	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0005	1302	11	9	2	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0006	1302	9	8	1	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0007	1302	8	3	4	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0008	1302	7	0	7	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0009	1242	6	6	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0010	1032	6	1	1	0	1	3	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0011	1272	5	1	4	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0012	1242	5	4	1	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0013	1272	4	0	0	4	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0014	1152	3	3	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0015	1272	3	0	0	2	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0016	1272	3	1	0	1	0	1	copy fasta	LIAT1	chr17	405325	419666